Clinical Science
Screening of pathogenic mutation in a family with Axenfeld-Rieger syndrome by whole exome sequencing
Wang Qi, Liu Xinna, Shao Zhengbo, Yuan Huiping
Published 2022-10-10
Cite as Chin J Exp Ophthalmol, 2022, 40(10): 929-934. DOI: 10.3760/cma.j.cn115989-20200802-00555
Abstract
ObjectiveTo identify disease-causing variation in a Chinese family with Axenfeld-Rieger syndrome (ARS) through the analysis of clinical symptoms and hereditary information.
MethodsThe method of pedigree investigation was adopted.A Chinese ARS family including 15 family members of 3 generations was recruited in the Second Affiliated Hospital of Harbin Medical University in 2018.There were 3 patients in the family.The family history and clinical data were collected.Ophthalmic and general examinations were carried out in all the members included.DNA and RNA were extracted from collected peripheral venous blood samples of 2-5 ml from each member.Whole exome sequencing was used to screen the variations in the proband.Suspected variations screened through searching population databases and bioinformatics analysis were verified by Sanger sequencing and real-time quantitative PCR.Conservation analysis and deleteriousness prediction of suspected variations were conducted.The pathogenecity of candidate rare variations were evaluated according to the American College of Medical Genetics and Genomics (ACMG) standards and guidelines.This study followed the Declaration of Helsinki.The study protocol was approved by the Ethics Committee of the Second Affiliated Hospital of Harbin Medical University (No.KY2019-231).Written informed consent was obtained from each subject or custodian prior to entering the study cohort.
ResultsThe 3 patients all had typical ARS clinical features in eyes, teeth and umbilicus, and carried the same heterozygous variant, c.525delC (p.Asp175Glufs*) in the PITX2 gene, which were not found in other members, indicating co-segregation.The relative expression of PITX2 mRNA was 0.672±0.063 in the patients, which was significantly lower than 1.015±0.179 in the healthy controls (t=8.847, P<0.001).This variant was not recorded in dbSNP, 1000G, gnomeAD, ExAC, Korea1K and EVS databases, and it was labelled as deleterious by MutationTaster.The affected conservative amino acid sequences were found in 9 species.The variant was determined as pathogenic according to the ACMG standards and guidelines.
ConclusionsThe c.525delC (p.Asp175Glufs*) mutation of PITX2 gene is pathogenic in the pedigree.This is the first time that this mutation has been reported in Chinese family with ARS.
Key words:
Axenfeld-Rieger syndrome; Pedigree; Genetic testing; Whole exome sequencing; PITX2 gene; Frameshift mutation
Contributor Information
Wang Qi
Department of Ophthalmology, the Second Affiliated Hospital of Harbin Medical University, The Key Laboratory of Myocardial Ischemia, Harbin Medical University, Ministry Education, Future Medical Laboratory, the Second Affiliated Hospital of Harbin Medical University, Harbin 150086, China
Liu Xinna
Department of Ophthalmology, the Second Affiliated Hospital of Harbin Medical University, The Key Laboratory of Myocardial Ischemia, Harbin Medical University, Ministry Education, Future Medical Laboratory, the Second Affiliated Hospital of Harbin Medical University, Harbin 150086, China
Shao Zhengbo
Department of Ophthalmology, the Second Affiliated Hospital of Harbin Medical University, The Key Laboratory of Myocardial Ischemia, Harbin Medical University, Ministry Education, Future Medical Laboratory, the Second Affiliated Hospital of Harbin Medical University, Harbin 150086, China
Yuan Huiping
Department of Ophthalmology, the Second Affiliated Hospital of Harbin Medical University, The Key Laboratory of Myocardial Ischemia, Harbin Medical University, Ministry Education, Future Medical Laboratory, the Second Affiliated Hospital of Harbin Medical University, Harbin 150086, China
