Physics·Technique·Biology
Gamma pass rate classification prediction and interpretation based on SHAP value feature selection
Chen Luqiao, Ni Qianxi, Pang Jinmeng, Tan Jianfeng, Zhou Xin, Luo Longjun, Zeng Degao, Cao Jinjia
Published 2023-10-15
Cite as Chin J Radiat Oncol, 2023, 32(10): 914-919. DOI: 10.3760/cma.j.cn113030-20230110-00003
Abstract
ObjectiveTo explore the feasibility and validity of constructing an intensity-modulated radiotherapy gamma pass rate prediction model after combining the SHAP values with the extreme gradient boosting tree (XGBoost) algorithm feature selection technique, and to deliver corresponding model interpretation.
MethodsThe dose validation results of 196 patients with pelvic tumors receiving fixed-field intensity-modulated radiotherapy using modality-based measurements with a gamma pass rate criterion of 3%/2 mm and 10% dose threshold in Hunan Provincial Tumor Hospital from November 2020 to November 2021 were retrospectively analyzed. Prediction models were constructed by extracting radiomic features based on dose files and using SHAP values combined with the XGBoost algorithm for feature filtering. Four machine learning classification models were constructed when the number of features was 50, 80, 110 and 140, respectively. The area under the receiver operating characteristic curve (AUC), recall rate and F1 score were calculated to assess the classification performance of the prediction models.
ResultsThe AUC of prediction model constructed with 110 features selected based on the SHAP-valued features was 0.81, the recall rate was 0.93 and the F1 score was 0.82, which were all better than the other 3 models.
ConclusionFor intensity-modulated radiotherapy of pelvic tumor, SHAP values can be used in combination with the XGBoost algorithm to select the optimal subset of radiomic features to construct predictive models of gamma pass rates, and deliver an interpretation of the model output by SHAP values, which may provide value in understanding the prediction by machine learning-dependent models.
Key words:
Machine learning; Intensity-modulated radiotherapy; Feature selection; Model interpretation; Gamma pass rate
Contributor Information
Chen Luqiao
Department of Radiation Oncology, Hunan Cancer Hospital / the Affiliated Cancer Hospital of Xiangya School of Medicine, Central South University, Changsha 410013, China
Ni Qianxi
Department of Radiation Oncology, Hunan Cancer Hospital / the Affiliated Cancer Hospital of Xiangya School of Medicine, Central South University, Changsha 410013, China
Pang Jinmeng
Department of Radiation Oncology, Hunan Cancer Hospital / the Affiliated Cancer Hospital of Xiangya School of Medicine, Central South University, Changsha 410013, China
Tan Jianfeng
Department of Radiation Oncology, Hunan Cancer Hospital / the Affiliated Cancer Hospital of Xiangya School of Medicine, Central South University, Changsha 410013, China
Zhou Xin
Department of Radiation Oncology, Hunan Cancer Hospital / the Affiliated Cancer Hospital of Xiangya School of Medicine, Central South University, Changsha 410013, China
Luo Longjun
Department of Radiation Oncology, Hunan Cancer Hospital / the Affiliated Cancer Hospital of Xiangya School of Medicine, Central South University, Changsha 410013, China
Zeng Degao
Department of Radiation Oncology, Hunan Cancer Hospital / the Affiliated Cancer Hospital of Xiangya School of Medicine, Central South University, Changsha 410013, China
Cao Jinjia
School of Nuclear Science and Technology, University of South China, Hengyang 421001, China